The efficacy of limestone sand and pelletized lime for remediation of soil acidity was compared in order to determine if limestone sand was a more cost-effective alternative to pelletized lime. Between fall of 2002 an...The efficacy of limestone sand and pelletized lime for remediation of soil acidity was compared in order to determine if limestone sand was a more cost-effective alternative to pelletized lime. Between fall of 2002 and spring 2003, two forested sites in Pennsylvania were clear cut and fenced. Pelletized lime and limestone sand were applied to separate 400-m2 plots within the sites at rates of 2170 kg·ha-1 and 4335 kg·ha-1, respectively. Two additional 400-m2 plots were used as controls. A paired before-after control-impact study design was used to assess changes in soil, soil solution, vegetation and biomass after lime application. Soil samples were collected from the Oi, Oe + Oa, and A horizons before and after lime application. Woody and herbaceous vegetation was harvested from 1-m2 sub-plots before and after liming and bi-weekly soil solution samples were collected for six months following lime application. Analysis of variance procedures were used to compare changes in the treatment plots over time. Changes in soil chemistry following lime application were comparable on the limestone sand and pelletized lime plots. There was a significant increase in exchangeable Mg and Mg saturation in the Oe + Oa horizon on all of the lime treatment plots relative to controls, but a greater percentage of applied Ca and Mg was exchangeable in the O-horizon in pelletized lime plots nine months after liming. Plant biomass did not increase on the lime treatment plots relative to the control one year post treatment. The majority of applied Ca and Mg from pelletized lime and limestone sand remained in the litter layer, with little movement into the A-horizon after one growing season. These results indicated that the application of limestone sand at two times the rate of pelletized lime produced comparable changes in soil and soil solution chemistry at a fraction of the cost.展开更多
This study demonstrated using yttrium(Y)as an indicator to estimate the total rare earth element and Y contents(REY)in coal-associated samples and to facilitate selection of samples with high REY assays in a fast and ...This study demonstrated using yttrium(Y)as an indicator to estimate the total rare earth element and Y contents(REY)in coal-associated samples and to facilitate selection of samples with high REY assays in a fast and inexpensive manner.More than 10 anthracite-associated samples were collected from each of three Pennsylvanian sites(sites B,J and C)based on Thorium gamma ray logging suggesting high REY content.Several samples from each site were analyzed by ICP-MS to determine the rare earth distribution patterns and to establish the site-specific linear equations of Y and REY.The Y contents of the remaining samples were measured by a portable X-ray fluorescence analyzer,and the REY values were estimated based on the site-specific linear equation developed earlier.R-squared values above 0.70 were obtained for all the estimation equations from all three sites on both a whole sample basis and an ash basis.Previously,ash content has been widely used as an indicator of high REY content.This may not be applicable for a specific site.Site B in this study is an example where ash contents could not be statistically correlated with REY,so using Y for estimation is more applicable.The demonstrated sample screening process is suitable for samples from sites that share more similar distribution patterns(either MREY or LREY or HREY)as well as for samples from sites that share multiple distribution patterns(LREY/MREY/HREY)depending on the desirable accuracy.The demonstrated process lowers the analytical cost from$70 to 80 dollars per sample to$10-15 per sample while significantly reducing the processing time and acid consumption for ICP digestion.This is particularly true when a relatively large sample size is involved,for example,100 samples from one site analyzed by ICP-MS/OES.展开更多
基因调控网络是基于微阵列基因表达数据,对基因之间表达关系依赖程度的一种仿真或重建。从基因表达数据挖掘基因之间存在的一定程度因果关系,对重构基因调控网络具有十分重要的意义。提出一种基于频繁原子序列关联熵的基因关联分析算法...基因调控网络是基于微阵列基因表达数据,对基因之间表达关系依赖程度的一种仿真或重建。从基因表达数据挖掘基因之间存在的一定程度因果关系,对重构基因调控网络具有十分重要的意义。提出一种基于频繁原子序列关联熵的基因关联分析算法,通过基因关联熵有效识别基因之间的因果关系,并采用启发式搜索策略构建基因关联贝叶斯调控网络(gene association based Bayesian regulatory,GABR)。与基因贝叶斯网络描述基因表达水平值之间依赖关系不同,GABR是一种基因序列贝叶斯网络,基因关联分析对象是生物组织样本的基因表达值排序并置换为基因列下标所形成的序列。算法的优势在于基因变量取值原子序列,该基因为原子序列的结果,基因关联熵以及条件概率分布的计算更符合基因表达数据分析的生物本质特征。ALARM网络模拟数据的实验结果表明,基因关联分析算法性能明显优于同类算法。在酵母菌微阵列基因数据GDS2267和小鼠胚胎基因GSE76118等GEO数据集进行实验,测试结果表明GABR方法重构的基因调控网络具有较高的有效性和鲁棒性。展开更多
Large language models(LLMs),such as ChatGPT developed by OpenAI,represent a significant advancement in artificial intelligence(AI),designed to understand,generate,and interpret human language by analyzing extensive te...Large language models(LLMs),such as ChatGPT developed by OpenAI,represent a significant advancement in artificial intelligence(AI),designed to understand,generate,and interpret human language by analyzing extensive text data.Their potential integration into clinical settings offers a promising avenue that could transform clinical diagnosis and decision-making processes in the future(Thirunavukarasu et al.,2023).This article aims to provide an in-depth analysis of LLMs’current and potential impact on clinical practices.Their ability to generate differential diagnosis lists underscores their potential as invaluable tools in medical practice and education(Hirosawa et al.,2023;Koga et al.,2023).展开更多
Neural damage or degeneration is at the crux of many diseases,and treatment of these diseases will require the development of therapeutics to enhance and guide neural regeneration.Both intrinsic and extrinsic factors ...Neural damage or degeneration is at the crux of many diseases,and treatment of these diseases will require the development of therapeutics to enhance and guide neural regeneration.Both intrinsic and extrinsic factors dictate a neuron’s ability to regenerate,and the combination of these factors results in the great regenerative capacity of the peripheral nervous system(PNS)and the poor regenerative capacity of the central nervous system(CNS)following injury.At the core of a neuron’s function is its ability to relay electrochemical signals,and a neuron’s excitability is a key factor in its ability to regenerate.Recent works have focused on the changes in neuronal electrophysiological properties,firing patterns,and ion flux after injury,which differentially activate signaling pathways at the core of regeneration.The role of glia in neuron regeneration has long been studied.展开更多
The COVID-19 pandemic,caused by the newly emerged coronavirus SARS-CoV-2,has resulted in unprecedented global health challenges,including millions of infections and deaths.While the direct effects of the virus are cri...The COVID-19 pandemic,caused by the newly emerged coronavirus SARS-CoV-2,has resulted in unprecedented global health challenges,including millions of infections and deaths.While the direct effects of the virus are critical,the interplay between SARS-CoV-2 and cellular host factors significantly impacts the replication cycle of the virus and the clinical severity of COVID-19.This review provides a comprehensive analysis of hostpathogen interactions,focusing on the functional roles and regulatory mechanisms of SARS-CoV-2 viral proteins.We systematically review the literature to detail how SARS-CoV-2 engages with host cellular machinery,with a specific emphasis on their modulation by E3 ubiquitin ligases.By dissecting these intricate interactions and the impact of E3 ligases on SARS-CoV-2 infection,we aimto uncover novel therapeutic opportunities and strategies to effectively combat COVID-19.展开更多
Triggered seismicity is a key hazard where fluids are injected or withdrawn from the subsurface and may impact permeability. Understanding the mechanisms that control fluid injection-triggered seismicity allows its mi...Triggered seismicity is a key hazard where fluids are injected or withdrawn from the subsurface and may impact permeability. Understanding the mechanisms that control fluid injection-triggered seismicity allows its mitigation. Key controls on seismicity are defined in terms of fault and fracture strength, second-order frictional response and stability, and competing fluid-driven mechanisms for arrest. We desire to constrain maximum event magnitudes in triggered earthquakes by relating pre-existing critical stresses to fluid injection volume to explain why some recorded events are significantly larger than anticipated seismic moment thresholds. This formalism is consistent with several uncharacteristically large fluid injection-triggered earthquakes. Such methods of reactivating fractures and faults by hydraulic stimulation in shear or tensile fracturing are routinely used to create permeability in the subsurface. Microearthquakes (MEQs) generated by such stimulations can be used to diagnose permeability evolution. Although high-fidelity data sets are scarce, the EGS-Collab and Utah FORGE hydraulic stimulation field demonstration projects provide high-fidelity data sets that concurrently track permeability evolution and triggered seismicity. Machine learning deciphers the principal features of MEQs and the resulting permeability evolution that best track permeability changes – with transfer learning methods allowing robust predictions across multiple eological settings. Changes in permeability at reactivated fractures in both shear and extensional modes suggest that permeability change (Δk) scales with the seismic moment (M) of individual MEQs as Δk∝M. This scaling relation is exact at early times but degrades with successive MEQs, but provides a method for characterizing crustal permeability evolution using MEQs, alone. Importantly, we quantify for the first time the role of prestress in defining the elevated magnitude and seismic moment of fluid injection-triggered events, and demonstrate that such MEQs can also be used as diagnostic in quantifying permeability evolution in the crust.展开更多
BACKGROUND: Sepsis, a common acute and critical disease, leads to 11 million deaths annually worldwide. Probiotics are living microorganisms that are beneficial to the host and may benefit sepsis outcomes, but their e...BACKGROUND: Sepsis, a common acute and critical disease, leads to 11 million deaths annually worldwide. Probiotics are living microorganisms that are beneficial to the host and may benefit sepsis outcomes, but their effects are stil inconclusive. This study aimed to evaluate the overal eff ect of probiotics on the prognosis of patients with sepsis.DATA RESOURCES: We searched several sources for published/presented studies, including Pub Med, EMBASE, Web of Science, the Cochrane Library and the US National Library of Medicine Clinical Trials Register(www.clinicaltrials.gov) updated through July 30, 2023, to identify all relevant randomized controlled trials(RCTs) or observational studies that assessed the effectiveness of probiotics or synbiotics in patients with sepsis and reported mortality. We focused primarily on mortality during the study period and analyzed secondary outcomes, including 28-day mortality, in-intensive care unit(ICU) mortality and other outcomes.RESULTS: Data from 405 patients in five RCTs and 108 patients in one cohort study were included in the analysis. The overall quality of the studies was satisfactory, but clinical heterogeneity existed. All adult studies reported a tendency for probiotics to reduce the mortality of patients with sepsis, and most studies reported a decreasing trend in the incidence of infectious complications, length of ICU stay and duration of antibiotic use. There was only one RCT involving children.CONCLUSION: Probiotics show promise for improving the prognosis of patients with sepsis, including reducing mortality and the incidence of infectious complications, particularly in adult patients. Despite the limited number of studies, especially in children, these findings will be encouraging for clinical practice in the treatment of sepsis and suggest that gut microbiota-targeted therapy may improve the prognosis of patients with sepsis.展开更多
This study uses logistic and Poisson regression models to examine the factors influencing the adoption of sustain-able land management(SLM)practices in Mali using two rounds of the nationally representative survey Enq...This study uses logistic and Poisson regression models to examine the factors influencing the adoption of sustain-able land management(SLM)practices in Mali using two rounds of the nationally representative survey Enquête Agricole de Conjoncture Intégrée aux Conditions de Vie des Ménages.The SLMs considered include the applica-tion of organic fertilizers,the application of inorganic fertilizers,the use of improved seeds,and the practice of intercropping.On average the application of organic fertilizers(39.2%),and inorganic fertilizers(28.7%)are the most frequent SLM practices among Malian farmers,and between 2014 and 2017,we observe a decline in the practice of intercropping.The regression results show that farmers’adoption of different SLMs is significantly associated with biophysical factors(average temperature,climate type,plot size,plot shape,and location),de-mographic factors(age,gender,education,household size),and socioeconomic factors(number of cultivated plots,livelihood diversification,type of crop grown,market access,credit access,economic shocks,and social capital).Our findings suggest that policymakers and agricultural development agencies in Mali need to adopt a multidimensional policy framework to unlock the untapped potential of SLM practices in promoting sustainable agriculture and food security.展开更多
文摘The efficacy of limestone sand and pelletized lime for remediation of soil acidity was compared in order to determine if limestone sand was a more cost-effective alternative to pelletized lime. Between fall of 2002 and spring 2003, two forested sites in Pennsylvania were clear cut and fenced. Pelletized lime and limestone sand were applied to separate 400-m2 plots within the sites at rates of 2170 kg·ha-1 and 4335 kg·ha-1, respectively. Two additional 400-m2 plots were used as controls. A paired before-after control-impact study design was used to assess changes in soil, soil solution, vegetation and biomass after lime application. Soil samples were collected from the Oi, Oe + Oa, and A horizons before and after lime application. Woody and herbaceous vegetation was harvested from 1-m2 sub-plots before and after liming and bi-weekly soil solution samples were collected for six months following lime application. Analysis of variance procedures were used to compare changes in the treatment plots over time. Changes in soil chemistry following lime application were comparable on the limestone sand and pelletized lime plots. There was a significant increase in exchangeable Mg and Mg saturation in the Oe + Oa horizon on all of the lime treatment plots relative to controls, but a greater percentage of applied Ca and Mg was exchangeable in the O-horizon in pelletized lime plots nine months after liming. Plant biomass did not increase on the lime treatment plots relative to the control one year post treatment. The majority of applied Ca and Mg from pelletized lime and limestone sand remained in the litter layer, with little movement into the A-horizon after one growing season. These results indicated that the application of limestone sand at two times the rate of pelletized lime produced comparable changes in soil and soil solution chemistry at a fraction of the cost.
基金the Department of Energy[Grant Number DE-FE-0030146]。
文摘This study demonstrated using yttrium(Y)as an indicator to estimate the total rare earth element and Y contents(REY)in coal-associated samples and to facilitate selection of samples with high REY assays in a fast and inexpensive manner.More than 10 anthracite-associated samples were collected from each of three Pennsylvanian sites(sites B,J and C)based on Thorium gamma ray logging suggesting high REY content.Several samples from each site were analyzed by ICP-MS to determine the rare earth distribution patterns and to establish the site-specific linear equations of Y and REY.The Y contents of the remaining samples were measured by a portable X-ray fluorescence analyzer,and the REY values were estimated based on the site-specific linear equation developed earlier.R-squared values above 0.70 were obtained for all the estimation equations from all three sites on both a whole sample basis and an ash basis.Previously,ash content has been widely used as an indicator of high REY content.This may not be applicable for a specific site.Site B in this study is an example where ash contents could not be statistically correlated with REY,so using Y for estimation is more applicable.The demonstrated sample screening process is suitable for samples from sites that share more similar distribution patterns(either MREY or LREY or HREY)as well as for samples from sites that share multiple distribution patterns(LREY/MREY/HREY)depending on the desirable accuracy.The demonstrated process lowers the analytical cost from$70 to 80 dollars per sample to$10-15 per sample while significantly reducing the processing time and acid consumption for ICP digestion.This is particularly true when a relatively large sample size is involved,for example,100 samples from one site analyzed by ICP-MS/OES.
文摘基因调控网络是基于微阵列基因表达数据,对基因之间表达关系依赖程度的一种仿真或重建。从基因表达数据挖掘基因之间存在的一定程度因果关系,对重构基因调控网络具有十分重要的意义。提出一种基于频繁原子序列关联熵的基因关联分析算法,通过基因关联熵有效识别基因之间的因果关系,并采用启发式搜索策略构建基因关联贝叶斯调控网络(gene association based Bayesian regulatory,GABR)。与基因贝叶斯网络描述基因表达水平值之间依赖关系不同,GABR是一种基因序列贝叶斯网络,基因关联分析对象是生物组织样本的基因表达值排序并置换为基因列下标所形成的序列。算法的优势在于基因变量取值原子序列,该基因为原子序列的结果,基因关联熵以及条件概率分布的计算更符合基因表达数据分析的生物本质特征。ALARM网络模拟数据的实验结果表明,基因关联分析算法性能明显优于同类算法。在酵母菌微阵列基因数据GDS2267和小鼠胚胎基因GSE76118等GEO数据集进行实验,测试结果表明GABR方法重构的基因调控网络具有较高的有效性和鲁棒性。
文摘Large language models(LLMs),such as ChatGPT developed by OpenAI,represent a significant advancement in artificial intelligence(AI),designed to understand,generate,and interpret human language by analyzing extensive text data.Their potential integration into clinical settings offers a promising avenue that could transform clinical diagnosis and decision-making processes in the future(Thirunavukarasu et al.,2023).This article aims to provide an in-depth analysis of LLMs’current and potential impact on clinical practices.Their ability to generate differential diagnosis lists underscores their potential as invaluable tools in medical practice and education(Hirosawa et al.,2023;Koga et al.,2023).
文摘Neural damage or degeneration is at the crux of many diseases,and treatment of these diseases will require the development of therapeutics to enhance and guide neural regeneration.Both intrinsic and extrinsic factors dictate a neuron’s ability to regenerate,and the combination of these factors results in the great regenerative capacity of the peripheral nervous system(PNS)and the poor regenerative capacity of the central nervous system(CNS)following injury.At the core of a neuron’s function is its ability to relay electrochemical signals,and a neuron’s excitability is a key factor in its ability to regenerate.Recent works have focused on the changes in neuronal electrophysiological properties,firing patterns,and ion flux after injury,which differentially activate signaling pathways at the core of regeneration.The role of glia in neuron regeneration has long been studied.
文摘The COVID-19 pandemic,caused by the newly emerged coronavirus SARS-CoV-2,has resulted in unprecedented global health challenges,including millions of infections and deaths.While the direct effects of the virus are critical,the interplay between SARS-CoV-2 and cellular host factors significantly impacts the replication cycle of the virus and the clinical severity of COVID-19.This review provides a comprehensive analysis of hostpathogen interactions,focusing on the functional roles and regulatory mechanisms of SARS-CoV-2 viral proteins.We systematically review the literature to detail how SARS-CoV-2 engages with host cellular machinery,with a specific emphasis on their modulation by E3 ubiquitin ligases.By dissecting these intricate interactions and the impact of E3 ligases on SARS-CoV-2 infection,we aimto uncover novel therapeutic opportunities and strategies to effectively combat COVID-19.
文摘Triggered seismicity is a key hazard where fluids are injected or withdrawn from the subsurface and may impact permeability. Understanding the mechanisms that control fluid injection-triggered seismicity allows its mitigation. Key controls on seismicity are defined in terms of fault and fracture strength, second-order frictional response and stability, and competing fluid-driven mechanisms for arrest. We desire to constrain maximum event magnitudes in triggered earthquakes by relating pre-existing critical stresses to fluid injection volume to explain why some recorded events are significantly larger than anticipated seismic moment thresholds. This formalism is consistent with several uncharacteristically large fluid injection-triggered earthquakes. Such methods of reactivating fractures and faults by hydraulic stimulation in shear or tensile fracturing are routinely used to create permeability in the subsurface. Microearthquakes (MEQs) generated by such stimulations can be used to diagnose permeability evolution. Although high-fidelity data sets are scarce, the EGS-Collab and Utah FORGE hydraulic stimulation field demonstration projects provide high-fidelity data sets that concurrently track permeability evolution and triggered seismicity. Machine learning deciphers the principal features of MEQs and the resulting permeability evolution that best track permeability changes – with transfer learning methods allowing robust predictions across multiple eological settings. Changes in permeability at reactivated fractures in both shear and extensional modes suggest that permeability change (Δk) scales with the seismic moment (M) of individual MEQs as Δk∝M. This scaling relation is exact at early times but degrades with successive MEQs, but provides a method for characterizing crustal permeability evolution using MEQs, alone. Importantly, we quantify for the first time the role of prestress in defining the elevated magnitude and seismic moment of fluid injection-triggered events, and demonstrate that such MEQs can also be used as diagnostic in quantifying permeability evolution in the crust.
基金supported by the National High Level Hospital Clinical Research Funding (2022-PUMCH-B-109)Chinese Academy of Medical Science Innovation Fund for Medical Sciences (CIFMS)(2021-I2M-1-020)。
文摘BACKGROUND: Sepsis, a common acute and critical disease, leads to 11 million deaths annually worldwide. Probiotics are living microorganisms that are beneficial to the host and may benefit sepsis outcomes, but their effects are stil inconclusive. This study aimed to evaluate the overal eff ect of probiotics on the prognosis of patients with sepsis.DATA RESOURCES: We searched several sources for published/presented studies, including Pub Med, EMBASE, Web of Science, the Cochrane Library and the US National Library of Medicine Clinical Trials Register(www.clinicaltrials.gov) updated through July 30, 2023, to identify all relevant randomized controlled trials(RCTs) or observational studies that assessed the effectiveness of probiotics or synbiotics in patients with sepsis and reported mortality. We focused primarily on mortality during the study period and analyzed secondary outcomes, including 28-day mortality, in-intensive care unit(ICU) mortality and other outcomes.RESULTS: Data from 405 patients in five RCTs and 108 patients in one cohort study were included in the analysis. The overall quality of the studies was satisfactory, but clinical heterogeneity existed. All adult studies reported a tendency for probiotics to reduce the mortality of patients with sepsis, and most studies reported a decreasing trend in the incidence of infectious complications, length of ICU stay and duration of antibiotic use. There was only one RCT involving children.CONCLUSION: Probiotics show promise for improving the prognosis of patients with sepsis, including reducing mortality and the incidence of infectious complications, particularly in adult patients. Despite the limited number of studies, especially in children, these findings will be encouraging for clinical practice in the treatment of sepsis and suggest that gut microbiota-targeted therapy may improve the prognosis of patients with sepsis.
文摘This study uses logistic and Poisson regression models to examine the factors influencing the adoption of sustain-able land management(SLM)practices in Mali using two rounds of the nationally representative survey Enquête Agricole de Conjoncture Intégrée aux Conditions de Vie des Ménages.The SLMs considered include the applica-tion of organic fertilizers,the application of inorganic fertilizers,the use of improved seeds,and the practice of intercropping.On average the application of organic fertilizers(39.2%),and inorganic fertilizers(28.7%)are the most frequent SLM practices among Malian farmers,and between 2014 and 2017,we observe a decline in the practice of intercropping.The regression results show that farmers’adoption of different SLMs is significantly associated with biophysical factors(average temperature,climate type,plot size,plot shape,and location),de-mographic factors(age,gender,education,household size),and socioeconomic factors(number of cultivated plots,livelihood diversification,type of crop grown,market access,credit access,economic shocks,and social capital).Our findings suggest that policymakers and agricultural development agencies in Mali need to adopt a multidimensional policy framework to unlock the untapped potential of SLM practices in promoting sustainable agriculture and food security.